Documentation topic
PlantQTLdb Assistant
choose a mode, try copyable questions, and interpret tool results, charts and downloads
- Getting Started with Assistantcreate an account, choose a mode, and understand your results and daily allowances
- Gene Structure and Sequence Extractionview all annotated transcripts and extract reference DNA, cDNA, CDS, protein or promoter sequences
- Variant Annotation and Local QTL Evidenceinspect gene-region variants, stored effect annotations and nearby QTL/GWAS evidence with downloadable tables
- Functional Enrichment with g:Profilerfind over-represented functions in a gene set and understand adjusted P values and experimental backgrounds
- Network Analysis with STRINGexplore functional associations or physical interaction evidence between candidate proteins
- Finding Sequencing Data with ENAlocate public sequencing runs and source records without downloading large read files
- Sequence Similarity Search with BLASTsubmit a short DNA or protein sequence to NCBI and retrieve its local-alignment results
- Plant Motif Analysis with JASPAR and FIMOfind plant transcription-factor motifs and scan short DNA for predicted matches
- DNA Analysis with Evo2score supplied DNA, compare matched substitutions or request a model-generated continuation
- External Biological Evidence Sourcesunderstand the protein, ontology, pathway, expression and literature sources used during evidence investigation
- Troubleshooting and Limitationsresolve missing cards, unsupported inputs, pending jobs and incomplete results